FJMRI Journal | ISSN: Applied | DOI: via Zenodo | Open Access
COMPUTER SCIENCE & INFORMATION TECHNOLOGY · ARTIFICIAL INTELLIGENCE

Beyond LLMs: AI Agents and Post-Quantum Cryptography

AI is moving beyond standalone language models toward autonomous agents capable of planning and executing complex tasks, while post-quantum cryptography prepares digital systems for future quantum threats. Explore both developments and their research implications.

F
FJMRI Editorial Team
| September 30, 2026 | ⏱️ 11 min read
Beyond LLMs: AI Agents and Post-Quantum Cryptography

Large language models (LLMs) have significantly changed artificial intelligence by enabling systems to generate text, analyze information, write code, and interact with users through natural language. However, the next stage of AI research is moving beyond systems that primarily respond to prompts toward autonomous AI agents capable of planning, using tools, coordinating with other agents, and completing multi-step objectives.

At the same time, another major transformation is taking place in cybersecurity. Advances in quantum computing have created the need for cryptographic algorithms designed to remain secure against quantum-enabled attacks. This has accelerated research and adoption efforts surrounding post-quantum cryptography (PQC).

These developments represent two different but increasingly important directions in computer science. Autonomous AI is changing how computational tasks are performed, while post-quantum cryptography is changing how digital information may need to be protected.

For researchers, PhD scholars, and technology professionals, understanding both areas provides an important perspective on the future of artificial intelligence, cybersecurity, distributed systems, and trustworthy computing.

From LLMs to Autonomous AI Agents

An LLM can generate an answer based on an input prompt, but an AI agent is designed to operate within a broader workflow.

An autonomous AI agent may be capable of:

  • Interpreting a high-level objective
  • Breaking a problem into smaller tasks
  • Selecting appropriate tools
  • Retrieving information from external systems
  • Executing actions
  • Evaluating intermediate results
  • Adapting its plan when conditions change
  • Collaborating with other specialized agents

This distinction is important because an agent does not necessarily treat every interaction as an isolated question-and-answer exchange.

For example, a conventional LLM workflow might ask:

"Summarize these five research papers."

An agentic workflow could instead be given an objective such as:

"Identify recent research on soft robotics, organize the literature by application area, compare research methods, and prepare a structured literature-review draft."

The second workflow requires planning, information retrieval, processing, evaluation, and potentially multiple tool interactions.

What Makes an AI System Agentic?

The term agentic AI can describe systems with varying levels of autonomy. There is no single architecture that defines every AI agent.

Common components include:

Component Function Example
LLM or reasoning model Interprets objectives and generates decisions Language or multimodal model
Memory Maintains relevant information Vector database or structured memory
Planning Breaks objectives into tasks Task decomposition
Tools Interacts with external systems APIs, databases, browsers
Perception Processes environmental information Documents, images, sensor data
Action layer Executes approved operations Code execution or API calls
Evaluation Checks intermediate results Rule-based or model-based verification
Coordination Manages multiple agents Multi-agent workflow

The architecture can therefore extend considerably beyond the underlying language model.

The Rise of Multi-Agent Systems

A particularly important research direction is the development of multi-agent AI systems.

Instead of asking one model to perform every part of a complex task, a system can distribute responsibilities among specialized agents.

For example, an academic research workflow could contain:

  • Research Agent: Identifies relevant literature.
  • Analysis Agent: Extracts methodologies and findings.
  • Citation Agent: Organizes bibliographic information.
  • Verification Agent: Checks claims and sources.
  • Writing Agent: Produces a structured draft.
  • Review Agent: Evaluates the final output.

The agents can communicate through predefined workflows or dynamic coordination mechanisms.

Why Multi-Agent Systems Matter

Complex problems often require different capabilities rather than a single general-purpose process.

A multi-agent architecture can potentially provide:

  • Task specialization
  • Parallel processing
  • Modular system design
  • Independent verification
  • Flexible workflow orchestration
  • Improved separation of responsibilities

However, adding agents does not automatically improve accuracy. Poor coordination can introduce duplicated work, inconsistent decisions, circular reasoning, or propagation of incorrect information.

Editorial Insight: The research challenge is not simply to create more autonomous agents. It is to establish reliable mechanisms for planning, verification, authorization, observability, and human oversight as autonomy increases.

Real-World Example: Research Automation

Consider a research team investigating machine learning applications in healthcare.

A basic LLM could help summarize individual papers.

An agentic research system could potentially perform a broader workflow:

  1. Define search criteria.
  2. Retrieve relevant literature.
  3. Classify papers by research area.
  4. Extract datasets and methodologies.
  5. Compare evaluation metrics.
  6. Identify recurring limitations.
  7. Detect contradictory findings.
  8. Generate a structured literature map.
  9. Request human verification before producing conclusions.

The important distinction is that the system is executing a workflow, rather than merely generating an answer.

Researchers should nevertheless verify retrieved sources, citations, numerical results, and interpretations before using agent-generated material in scholarly work.

Challenges of Autonomous AI

Greater autonomy introduces new technical and research challenges.

Hallucination and Incorrect Reasoning

An autonomous system can make an incorrect assumption and use that assumption throughout several subsequent steps.

This can be more difficult to detect than a single incorrect response because the error may propagate through the workflow.

Tool Misuse

Agents may interact with databases, APIs, software environments, or other external systems. Incorrect tool selection or parameters can therefore produce unintended results.

Excessive Autonomy

A system that can independently perform actions should not necessarily be permitted to execute every possible operation.

Sensitive actions may require explicit human approval.

Evaluation

Traditional benchmarks often evaluate whether a model produces a correct answer. Agentic systems require broader evaluation, including:

  • Task completion
  • Planning quality
  • Tool-use accuracy
  • Error recovery
  • Reliability
  • Cost
  • Latency
  • Safety
  • Reproducibility

Beyond AI: The Quantum Security Challenge

While AI is becoming more autonomous, cybersecurity researchers are preparing for another technological shift: large-scale quantum computing.

Many widely deployed public-key cryptographic systems depend on mathematical problems that are difficult for classical computers to solve efficiently.

Sufficiently capable quantum computers could threaten some of these cryptographic assumptions.

This has led to the development of post-quantum cryptography, which focuses on cryptographic algorithms designed to resist attacks from both classical and quantum computers.

What Is Post-Quantum Cryptography?

Post-quantum cryptography does not mean encryption performed by a quantum computer.

Instead, PQC refers to cryptographic techniques intended to provide security against attackers who may possess quantum computing capabilities while remaining implementable on conventional computing infrastructure.

This distinction is important.

Concept Purpose Computing Environment
Classical cryptography Protects against conventional computational attacks Classical computers
Quantum cryptography Uses quantum physical principles for security applications Quantum communication systems
Post-quantum cryptography Uses classical algorithms designed to resist quantum attacks Primarily classical computers
Quantum computing Performs computation using quantum-mechanical principles Quantum computers

PQC is therefore particularly relevant to existing digital infrastructure because organizations can potentially deploy new cryptographic algorithms without replacing all conventional computing hardware.

Why Cryptographic Migration Matters

Cryptographic systems are deeply integrated into modern infrastructure.

They protect:

  • Web communications
  • Cloud services
  • Digital signatures
  • Software updates
  • Financial transactions
  • Government systems
  • Healthcare information
  • Identity systems
  • Enterprise networks
  • Long-term archived data

Replacing cryptographic algorithms across these environments is not a simple software update.

Organizations may need to identify where cryptography is used, determine which algorithms are deployed, update protocols, test compatibility, and manage certificates and keys.

This creates a major cryptographic inventory and migration challenge.

The "Harvest Now, Decrypt Later" Problem

One reason post-quantum migration is being discussed before large-scale quantum computers become available is the possibility of collecting encrypted information today and attempting to decrypt it in the future.

This scenario is often described as "harvest now, decrypt later."

It is particularly relevant for information that must remain confidential for many years.

For example, organizations handling sensitive research, health, financial, governmental, or intellectual-property information may need to consider the expected confidentiality lifetime of their data when evaluating cryptographic migration strategies.

Post-Quantum Cryptography and Research

PQC creates research opportunities across several areas of computer science.

Potential research topics include:

  • Performance benchmarking of post-quantum algorithms
  • PQC implementation on resource-constrained devices
  • Cryptographic migration strategies
  • Hybrid classical and post-quantum protocols
  • PQC for cloud computing
  • Post-quantum digital signatures
  • Secure Internet communication
  • Cryptographic agility
  • PQC for IoT environments
  • Quantum-resistant identity management

Researchers should evaluate algorithms using measurable criteria such as computational performance, memory requirements, communication overhead, key and signature sizes, implementation complexity, and security assumptions.

AI and Post-Quantum Security: Two Converging Research Areas

Autonomous AI and post-quantum cryptography may appear to be unrelated fields, but they intersect through the broader concept of trustworthy computing.

AI agents increasingly interact with external systems, APIs, databases, cloud platforms, and digital identities. These interactions require authentication, authorization, confidentiality, and integrity.

As autonomous systems become more capable, securing their communications and identities becomes increasingly important.

Potential research intersections include:

  • Post-quantum authentication for AI agents
  • Secure communication between autonomous agents
  • Cryptographic identity for multi-agent systems
  • PQC-enabled cloud AI infrastructure
  • Secure agent-to-agent communication
  • AI-assisted cryptographic migration
  • Automated detection of cryptographic dependencies

This creates opportunities for interdisciplinary research combining artificial intelligence, cybersecurity, distributed systems, and cryptography.

Good vs. Weak Research Questions

A strong research project begins with a precise question.

Weak Example

"How will AI agents change cybersecurity?"

This question is extremely broad and difficult to evaluate experimentally.

Stronger Example

"How does multi-agent task decomposition affect task completion accuracy and latency in automated cybersecurity workflows?"

This version identifies measurable variables and a specific system context.

Another example:

Weak Example

"Is post-quantum cryptography secure?"

Security is not a single measurable variable in this context.

Stronger Example

"How do selected post-quantum signature schemes compare in computational overhead, signature size, and verification latency for resource-constrained IoT devices?"

The second question creates a research design that can be tested quantitatively.

Research Methodology for AI Agent Studies

Researchers studying autonomous AI systems should establish reproducible evaluation procedures.

A useful experimental framework may include:

1. Define the task.
Specify the objective, constraints, available tools, and expected outputs.

2. Establish a baseline.
Compare the agentic system with a conventional LLM workflow or non-agentic method.

3. Define evaluation metrics.
Measure accuracy, completion rate, latency, cost, tool-use errors, and recovery from failures.

4. Control the environment.
Document model versions, prompts, tools, datasets, and system configurations.

5. Evaluate failure cases.
Record situations in which agents make incorrect decisions or fail to complete tasks.

6. Include human oversight.
Identify which actions require human review or authorization.

7. Report reproducibility information.
Provide sufficient methodological details for other researchers to reproduce the experiment.

Research Methodology for Post-Quantum Cryptography

PQC research similarly benefits from controlled benchmarking.

Researchers should consider:

  • Algorithm selection
  • Security assumptions
  • Hardware environment
  • Implementation language
  • Key-generation performance
  • Encryption or encapsulation performance
  • Decryption or decapsulation performance
  • Signature generation and verification
  • Memory consumption
  • Communication overhead
  • Key and ciphertext sizes

Results should be reported using clearly defined experimental conditions rather than relying only on theoretical comparisons.

What Researchers Should Watch Next

Several research directions are likely to remain important as these technologies mature.

Autonomous AI

Agent orchestration: How should multiple agents coordinate efficiently?

Reliable planning: How can systems detect and correct planning errors?

Agent evaluation: What benchmarks accurately measure autonomous performance?

Human oversight: How should responsibility and authorization be distributed?

Security: How can agents be protected from prompt injection, malicious tools, compromised data, and unauthorized actions?

Post-Quantum Cryptography

Migration: How can organizations transition existing infrastructure efficiently?

Performance: How do post-quantum algorithms behave on different hardware?

Cryptographic agility: How can systems switch algorithms without extensive redesign?

Embedded security: Can PQC operate efficiently on constrained devices?

Long-term security: How should organizations protect information requiring extended confidentiality?

The Broader Shift in Computer Science

The movement beyond LLMs and the transition toward post-quantum cryptography illustrate a broader trend in computer science.

AI research is moving from generation toward action.

Cybersecurity research is moving from current cryptographic assumptions toward quantum-resistant architectures.

Both developments emphasize the importance of designing systems that remain reliable under changing technological conditions.

For researchers and PhD scholars, this means studying not only individual algorithms but also the larger systems in which those algorithms operate.

Conclusion

The next phase of computing will not be defined by a single technology.

Autonomous AI agents are extending the capabilities of language models by introducing planning, tool use, coordination, and task execution. At the same time, post-quantum cryptography is preparing digital infrastructure for a future in which conventional cryptographic assumptions may no longer provide sufficient protection.

These fields raise important research questions around autonomy, security, reliability, scalability, verification, and trust.

For computer science researchers, the opportunity lies in developing systems that are not only more capable but also measurable, secure, explainable, and responsibly designed.

The transition beyond LLMs is therefore not simply about making AI more autonomous. It is also about building the secure computational infrastructure required for increasingly autonomous digital systems.

Actionable Pre-Submission Checklist

Before submitting research related to autonomous AI, multi-agent systems, or post-quantum cryptography, verify the following:

  • Research question: Is the research problem specific and experimentally testable?
  • Novelty: Is the contribution clearly distinguished from existing literature?
  • Baseline: Is there an appropriate conventional or competing approach?
  • Methodology: Are datasets, models, algorithms, hardware, and experimental conditions documented?
  • Evaluation: Are quantitative performance metrics clearly defined?
  • Failure analysis: Are limitations and unsuccessful cases reported?
  • Security: Have relevant threat models and attack scenarios been considered?
  • Reproducibility: Could another researcher reproduce the experiment?
  • Ethics: Are privacy, human oversight, and responsible-use considerations addressed?
  • Comparisons: Are competing approaches evaluated using consistent criteria?
  • References: Are recent and authoritative scholarly sources included?
  • Conclusion: Does the conclusion remain consistent with the evidence presented?

A strong contribution in these fields should ultimately demonstrate not only what a new technology can do, but also how reliably, securely, efficiently, and reproducibly it performs under defined conditions.

F

About FJMRI Editorial Team

Contributing researcher and scholar at Frontier Journal of Multidisciplinary Research and Innovation (FJMRI). This article represents the author's own scholarly perspective and views.

📅 Published September 30, 2026 · ⏱️ 11 min read